Rotations in Photo Mechanic are "soft rotations," done through metadata.
Many cameras have a sensor for camera orientation that saves embeds metadata (EXIF) in the photo. Photo Mechanic uses this EXIF orientation data (if available) when displaying your photos.
Rotating a photo in Photo Mechanic will only change the EXIF preferences. If you open a photo in other software, it may or may not read the EXIF data, so you may find that photos have "lost" their rotation when you open them in image editing software.